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annnet
saezlab/annnet
Home
Installation
Quickstart
Tutorials and Scenarios
Tutorials and Scenarios
Notebooks Overview
HowTo's
HowTo's
Quickstart
Attributes and views
Tables and storage
Slices and subgraphs
Hyperedges and traversal
Directed hyperedges & stoichiometry
Multilayer
Multilayer math
History and reproducibility
Backend accessors
Flexible edge orientation
Use Cases
Scenarios
Scenarios
OmniPath table ingestion
Cytoscape CX2 export
PyG HeteroData export
Causal activity bridge
Explanations
Explanations
Explanations Overview
Multilayer and multi-aspect graphs
Slices and views
Interoperability
Storage and IO
Tracking changes
Adding edges
API Reference
API Reference
API Reference Overview
Public and internal APIs
Support helpers
Core
Core
Graph
Backend accessors
Indexing
Attributes
Operations
History
Cache
Views
Slices
Layers
Algorithms
Algorithms
Traversal
IO
IO
Native .annnet format
Parquet
GraphML and GEXF
SIF
SBML
CX2
JSON and NDJSON
CSV
Excel
DataFrames
OmniPath
Adapters
Adapters
NetworkX adapter
igraph adapter
graph-tool adapter
PyTorch Geometric adapter
Utilities
Utilities
Plotting
Community
Community
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Contribute to the Documentation
Contribute to the package code
Use Case Notebooks
The use-case notebooks are coming soon.