name: annnet-use-case-uc2-fibrosis
channels:
  - conda-forge
dependencies:
  - python>=3.11,<3.14
  - graphviz
  - pip
  - pip:
      - annnet @ git+https://github.com/saezlab/annnet.git
      - graphviz
      - ipykernel>=6
      - matplotlib>=3.5
      - numpy>=1.24
      - networkx>=3.3
      - omnipath>=1.0
      - omnipath-client @ git+https://github.com/saezlab/omnipath-client.git
      - pandas>=2.0
      - pyreadr
      - pyarrow>=10
      - zarr>=2.18
      - numcodecs>=0.12
      - polars>=0.20.0
      - requests
      - scipy
      - lxml>=4.9
      - python-igraph>=0.11
      - python-libsbml>=5.20
      - torch>=2.2
      - torch-geometric>=2.5
      - scikit-learn